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Table 1 SNP sites detected in two or more traits

From: Genome-wide association study reveals the genetic basis of yield- and quality-related traits in wheat

SNP Trait Environment Chromosome Position -log10p R2(%)
RAC875_rep_c111906_144 FLL/FLA E2 2A 27,967,266 4.45–4.95 2.84–3.23
Tdurum_contig19022_1524 FLL/FLA E2 7B 530,376,060 4.13–4.24 2.61–2.68
wsnp_CAP11_c2435_1256981 FLL/FLA/FLW E2E5 7A 655,447,518 5.76–7.74 3.79–5.32
GENE-0035_150 FLL/FLA/FLW/MTN E2E5 1B 465,098,532 4.22–6.73 2.65–4.55
GENE-0993_47 FLL/FLA/FLW/MTN E2E5 2B 55,691,934 4.68–7.52 2.99–5.16
Tdurum_contig73039_241 FLL/FLA/FLW/MTN E2E5 3B 527,296,306 5.03–7.47 3.25–5.12
Tdurum_contig4974_355 FLL/FLA/FLW/MTN E2E5 4B 95,708,069 4.71–7.29 3.01–4.98
Ku_c7989_781 FLL/FLA/FLW/MTN E2E5 5B 253,378,428 4.28–5.77 2.7–3.82
D_contig73483_655 FLL/FLA/FLW/MTN E2E5 5D 100,546,173 4.7–7.93 3.01–5.47
GENE-3803_329 FLL/FLA/FLW/MTN E2E5 6B 556,487,785 4.14–5.61 2.59–4.37
BobWhite_c36864_159 FLL/FLA/FLW/MTN E2E5 7B 131,745,465 4.19–6.86 2.63–4.85
Tdurum_contig41918_2469 FLL/FLA/FLW/MTN E2E5 7B 628,465,395 4.74–7.57 3.03–5.20
Tdurum_contig42029_1151 FLL/FLA/FLW/MTN E2E5 7B 660,237,019 4.78–7.64 3.07–5.25
BS00099128_51 FLW/MTN E2E5 2D 470,217,019 4.27–4.73 2.91–3.23
Tdurum_contig17320_458 FLW/MTN E2E5 3A 170,784,653 4.12–6.46 2.80–4.61
Excalibur_c43604_751 FLW/MTN E2E5 3B 807,286,509 4.16–6.97 2.83–5.02
Tdurum_contig100205_499 FLW/MTN E2E5 4B 78,818,313 4.38–6.7 3–4.8
wsnp_Ex_c402_791233 FLA/FLW E2E5 1B 548,623,447 5.51–6.37 3.87–4.34
Excalibur_c89155_115 FLA/FLW E5 6B 619,483,986 4.1–4.36 2.78–2.8
GENE-1343_878 FLA/FLW/MTN E2E5 2D 13,440,948 5.10–6.4 3.47–4.3
D_F1BEJMU01DOWJ3_176 FLA/FLW/MTN E2E5 2D 138,694,869 5.49–6.38 3.66–4.46
GENE-0826_51 FLA/FLW/MTN E2E5 3A 32,151,249 4.94–6.07 3.23–4.09
Tdurum_contig16643_466 FLA/FLW/MTN E2E5 3A 549,267,983 4.49–5.85 2.89–4.12
D_GBF1XID01CVZMX_132 FLA/FLW/MTN E2E5 5D 483,515,041 4.89–6.97 3.2–5.02
IACX1201 FLA/FLW/MTN E2E5 6B 219,580,396 4.06–5.96 2.65–4.2
D_contig38762_578 FLA/FLW/MTN E2E5 6D 67,378,176 5.39–6.66 3.75–4.49
RAC875_c48208_304 FLA/FLW/MTN E2E5 7B 3,505,857 5.28–6.17 3.49–4.13
GENE-4534_455 FLA/FLW/MTN E2E5 7B 152,051,848 5.33–6.43 3.52–4.32
Tdurum_contig42179_1562 PET/MTN E2E5 3A 266,433,409 4.71–7.27 3.19–5.26
D_contig26931_415 PET/MTN E2E5 5D 283,010,539 4.12–7.34 2.74–5.32
wsnp_Ex_c14654_22713386 PET/MTN E2E5 7A 11,098,761 4.53–7.07 3.05–5.1
BS00044895_51 PET/MTN E2E5 7A 211,733,339 4.35–7.05 2.91–5.08
Tdurum_contig19022_1524 PET/MTN E2E5 7B 530,376,060 4.6–5.51 3.13–3.85
Kukri_c56333_138 MTN/FC BLUP 1B 670,176,213 4.50–4.75 1.80–2.77
BobWhite_c19617_154 GFR/TGW BLUP 2B 209,099,527 4.89–4.91 3.46–3.59
Kukri_c322_1394 FD/SD E1/BLUP 4B 520,238,759 4.64–4.8 3.07–4.07
Tdurum_contig48366_1324 FD/SD E1E2/BLUP 4B 637,387,355 4.13–4.88 2.62–5.02
Tdurum_contig50783_67 FD/SD BLUP 4B 637,387,809 4.07–4.24 2.57–3.11
RAC875_rep_c105718_585 FIL/SIL/PH E3E4E5E6/BLUP 4D 25,989,112 4.09–7.89 2.03–7.56
BS00044895_51 FIL/SIL/TH E1E2 7A 211,733,339 4.4–6.47 3.78–5.97
BS00022854_51 SIL/TH E1E5 5B 614,983,507 4.29–6.13 2.7–5.62
Ex_c52589_795 GPC/WGC E1 3D 531,375,739 4.36–4.58 2.48–2.53
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BMC Plant Biology

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